| MirGeneDB ID | Aga-Mir-1000 |
|---|
| Family name |
MIR-1000 (all species) |
|---|
| Species |
African malaria mosquito (Anopheles gambiae) |
|---|
| MiRBase ID |
aga-mir-1000
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Aae-Mir-1000-P1
Aae-Mir-1000-P2
Bge-Mir-1000
Dan-Mir-1000
Dlo-Mir-1000
Dme-Mir-1000
Dmo-Mir-1000
Dsi-Mir-1000
Dya-Mir-1000
Gpa-Mir-1000
Hme-Mir-1000
Tca-Mir-1000
|
|---|
| Node of Origin (locus) |
Neoptera
|
|---|
| Node of Origin (family) |
Neoptera
|
|---|
Genome context
(GCF_943734735.2_idAnoGambNW_F1_1_genomic) |
NC_064601.1: 12965531-12965590 [+]
Ensembl
|
|---|
| Seed |
UAUUGUC |
|---|
Precursor
(pre-Mir +30nt flank) |
GGACACAGCUUCACCCCCUAGCAGUCGAUGAUAUUGUCCUGUCACAGCAGUACUUUUUGCCUAGUUUACUGUUGUUUCGGGACAUUUCCAUCGACGCUAGGGUUUUCAUCCGACCAUUUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GGACACAGCUUCACCCC---| A AUAU UC CUUUUU
CUAGC GUCGAUG UGUCCUG ACAGCAGUA G
GAUCG CAGCUAC ACAGGGC UGUUGUCAU C
CUUUACCAGCCUACUUUUGG^ - CUUU UU UUGAUC
. 110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
|---|
Tissue expression
|
| Ab |
Ab |
He |
He |
Mi |
Mi |
Ov |
Ov |
Ov |
| |
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Aga-Mir-1000_5p |
| mirBase accession | MIMAT0010109 |
|---|
| Sequence |
0- AUAUUGUCCUGUCACAGCAGUA -22
Get sequence
|
|---|
| Star sequence |
Aga-Mir-1000_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
38- CUGUUGUUUCGGGACAUUUCCA -60
Get sequence
|
|---|
