MirGeneDB 3.0
MirGeneDB ID

Aqu-Mir-2019

Family name MIR-2019 (all species)
Species Amphimedon (Amphimedon queenslandica)
MiRBase ID aqu-mir-2019
Paralogues
Orthologues Emu-Mir-2019 
Node of Origin (locus) Silicispongia
Node of Origin (family) Silicispongia
Genome context
(GCF_000090795.1_v1.0_SPONGE)		 NW_003546402.1: 48971-49077 [+] Ensembl
Seed AAGUGAU
Precursor
(pre-Mir +30nt flank)		 
ACGCCGUGAGACUGCGCCCGCUACCGAUUCAAAGUGAUCGGGUUGCCGUCUGAGCUCUAGCUAGCCAUACCCAGGCCUUGUUAACUUAACCAGUCCUAGAGAAGGCUCUGGCUCACACGGUAGCUUGCUCACUUAGAAACGGCCGAGGCGCUACUGCAAGGAGAACA
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Structure
        10        20           30        40        50        60        70        80   
ACGCCGUGAGACUGCGCCC   A---|  A   A      U           C  AGCUCUAGCUAGCCAUACCCAGGCCUUGUU 
                   GCU    CCG UUC AAGUGA CGGGUUGCCGU UG                              \
                   CGG    GGC AAG UUCACU GUUCGAUGGCA AC                              A
ACAAGAGGAACGUCAUCG-   AGCC^  A   A      C           C  UCGGUCUCGGAAGAGAUCCUGACCAAUUCA 
     160       150        140       130       120       110       100        90
Deep sequencing
CommentThis miRNA is also present in hexactinellid sponges (Sperling et al. 2010)
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
Ad Co Ju Pr
Mature sequence

Aqu-Mir-2019_5p
mirBase accessionMIMAT0009696
Sequence 
0- AAAGUGAUCGGGUUGCCGUCUG -22
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Star sequence

Aqu-Mir-2019_3p*
mirBase accessionMIMAT0009697
Sequence 
85- CACGGUAGCUUGCUCACUUAGA -107
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