Mir-193-P1e

MirGeneDB ID

Bla-Mir-193-P1e

Family name

Species

European lancelet (Branchiostoma lanceolatum)

MiRBase ID

Paralogues

Bla-Mir-193-P1f1 Bla-Mir-193-P1f2 Bla-Mir-193-P1g1 Bla-Mir-193-P1g2 Bla-Mir-193-P1h1 Bla-Mir-193-P1h2 Bla-Mir-193-P1i1 Bla-Mir-193-P1i2 Bla-Mir-193-P1j1 Bla-Mir-193-P1j2 Bla-Mir-193-P1k

Orthologues

Aae-Mir-193-P1 Aga-Mir-193-P1 Bfl-Mir-193-P1e Bge-Mir-193-P1 Cbr-Mir-193-P1-v1 Cel-Mir-193-P1-v1 Cte-Mir-193-P1 Dan-Mir-193-P1-v1 Dgr-Mir-193-P1 Dlo-Mir-193-P1 Dma-Mir-193-P1 Dme-Mir-193-P1-v1 Dmo-Mir-193-P1-v1 Dpu-Mir-193-P1 Dsi-Mir-193-P1-v1 Dya-Mir-193-P1-v1 Eba-Mir-193-P1 Esc-Mir-193-P1 Gpa-Mir-193-P1 Hme-Mir-193-P1 Hru-Mir-193-P1 Isc-Mir-193-P1 Lgi-Mir-193-P1 Lhy-Mir-193-P1 Mgi-Mir-193-P1 Mom-Mir-193-P1 Npo-Mir-193-P1 Obi-Mir-193-P1 Ofu-Mir-193-P1 Ovu-Mir-193-P1 Pau-Mir-193-P1 Pcr-Mir-193-P1 Pma-Mir-193-P1 Pmi-Mir-193-P1 Pve-Mir-193-P1 Rph-Mir-193-P1 Snu-Mir-193-P1 Tca-Mir-193-P1 War-Mir-193-P1 Xbo-Mir-193-P1

Node of Origin (locus)

Branchiostoma

Node of Origin (family)

Bilateria

Genome context
(BraLan2)

Sc0000095: 151599-151657 [-] Ensembl

Seed

ACUGGCC

Precursor
(pre-Mir +30nt flank)

GAAUUUCAUCGAAUUUCACGCAUGCUCAAUAAAGACUUAAGGGAACAGUCGGUGUCUAUCAGUUUCCCACUGGCCGUUUAAGUCCCGAUUGACGUUUGUGAAUCCUCGUCGUUUGUAGU

Get precursor sequence

Structure

        10         20         30        40         50         
GAAUUUCAUCGAAUUUCA-    U  -     AAA        -| AA    C  UGUCUA 
                   CGCA GC UCAAU   GACUUAAG GG  CAGU GG      \
                   GUGU UG AGUUA   CUGAAUUU CC  GUCA CC      U
UGAUGUUUGCUGCUCCUAA    U  C     GCC        G^ G-    C  UUUGAC 
       110       100        90        80         70        60

Deep sequencing

3' NTU

Unknown

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ad	Ad	Em	Em	Em	Em

Star sequence

Bla-Mir-193-P1e_5p* (predicted)

mirBase accession

None

Sequence

0- AAAGACUUAAGGGAACAGUCGG -22

Get sequence

Mature sequence

Bla-Mir-193-P1e_3p

mirBase accession

None

Sequence

37- CACUGGCCGUUUAAGUCCCGAU -59

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