| MirGeneDB ID | Cpo-Mir-3085 |
|---|
| Family name |
MIR-3085 (all species) |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-3085
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-3085
Cfa-Mir-3085
Cja-Mir-3085
Dno-Mir-3085
Ete-Mir-3085
Hsa-Mir-3085
Laf-Mir-3085
Mml-Mir-3085
Mmr-Mir-3085
Mmu-Mir-3085
Ocu-Mir-3085
Pab-Mir-3085
Rno-Mir-3085
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(cavPor3) |
scaffold_1: 31517489-31517549 [-]
UCSC
|
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| Seed |
CUGGCUG |
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Precursor
(pre-Mir +30nt flank) |
AUGUACACAGCUUCCAGCCCUGCUCUGGGAAGGCGCCAUUCUGAGGGCCAGGAGUUUGAUUAUGAGUCACUCUGGCUGCUAUGGCCCCUCCCAGGGCCUGGGGAUCACACCCAGGCUUGUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
AUGUACACAGCUUCCAG-- U-| A C UCUGAG G UUGAUU
CCC GCUCUGGGA GG GCCAU GGCCAG AGU \
GGG CGGGACCCU CC CGGUA UCGGUC UCA A
GUGUUCGGACCCACACUAG UC^ C - UCG--- - CUGAGU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Yes
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Star sequence |
Cpo-Mir-3085_5p* (predicted) |
| mirBase accession | MIMAT0047435 |
|---|
| Sequence |
0- AGGCGCCAUUCUGAGGGCCAGGAGU -25
Get sequence
|
|---|
| Mature sequence |
Cpo-Mir-3085_3p |
| mirBase accession | MIMAT0047436 |
|---|
| Sequence |
40- UCUGGCUGCUAUGGCCCCUCC -61
Get sequence
|
|---|
