| MirGeneDB ID | Cpo-Mir-653 |
|---|
| Family name |
MIR-653 (all species) |
|---|
| Species |
Guinea pig (Cavia porcellus) |
|---|
| MiRBase ID |
cpo-mir-653
|
|---|
| Paralogues |
|
|---|
| Orthologues |
Bta-Mir-653
Cfa-Mir-653
Cja-Mir-653
Dno-Mir-653
Eca-Mir-653
Hsa-Mir-653
Mml-Mir-653
Mmr-Mir-653
Mmu-Mir-653
Ocu-Mir-653
Pab-Mir-653
Rno-Mir-653
|
|---|
| Node of Origin (locus) |
Eutheria
|
|---|
| Node of Origin (family) |
Eutheria
|
|---|
Genome context
(cavPor3) |
scaffold_11: 25053804-25053862 [-]
UCSC
|
|---|
| Seed |
UGAAACA |
|---|
Precursor
(pre-Mir +30nt flank) |
AACAGAGGUUCCUAUUUCCUUCCUUCAGUGUUGAAACACUCUCUACUGAACCAGGCUCCACACCAAGUUCACUGGAGUUUGUUUCAGUAUUGCAAGAAUGAUAAGAUUGAAGCUACUGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AACAGAGGUUCCUAUUUCCUUC- -| CU C CAGGCUC
CUU CAGUGUUGAAACA CUCUA UGAAC \
GAA GUUAUGACUUUGU GAGGU ACUUG C
CGUCAUCGAAGUUAGAAUAGUAA C^ UU C AACCACA
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
|
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|---|
| Mature sequence |
Cpo-Mir-653_5p |
| mirBase accession | MIMAT0047357 |
|---|
| Sequence |
0- UUGAAACACUCUCUACUGAACC -22
Get sequence
|
|---|
| Star sequence |
Cpo-Mir-653_3p* (predicted) |
| mirBase accession | MIMAT0047358 |
|---|
| Sequence |
37- UUCACUGGAGUUUGUUUCAGUA -59
Get sequence
|
|---|
