Mir-96-P1y

MirGeneDB ID

Gsa-Mir-96-P1y

Family name

MIR-96 (all species)

Species

Russian doll killer (Gyrodactylus salaris)

MiRBase ID

gsa-mir-96a

Paralogues

Gsa-Mir-96-P1z

Orthologues

Ami-Mir-96-P1 Ava-Mir-96-o1 Bfl-Mir-96-P1 Bla-Mir-96-P1 Bta-Mir-96-P1 Cfa-Mir-96-P1 Cin-Mir-96-P1 Cja-Mir-96-P1 Cli-Mir-96-P1 Cmi-Mir-96-P1 Cpi-Mir-96-P1 Cpo-Mir-96-P1 Cte-Mir-96-P1 Dno-Mir-96-P1 Eba-Mir-96-P1 Eca-Mir-96-P1 Efe-Mir-96-P1 Egr-Mir-96-P1 Ete-Mir-96-P1 Gga-Mir-96-P1 Gja-Mir-96-P1 Hsa-Mir-96-P1 Isc-Mir-96-P1 Laf-Mir-96-P1 Lan-Mir-96-P1 Lch-Mir-96-P1 Lhy-Mir-96-P1 Llo-Mir-96-P1 Loc-Mir-96-P1 Mdo-Mir-96-P1 Mml-Mir-96-P1 Mmr-Mir-96-P1 Mmu-Mir-96-P1 Mun-Mir-96-P1 Neu-Mir-96-P1 Oan-Mir-96-P1 Ocu-Mir-96-P1 Pab-Mir-96-P1 Pau-Mir-96-P1 Pbv-Mir-96-P1 Pca-Mir-96-P1 Pcr-Mir-96-P1 Pfl-Mir-96-P1 Pmi-Mir-96-P1 Rno-Mir-96-P1 Sha-Mir-96-P1 Sko-Mir-96-P1 Sma-Mir-96-P1 Snu-Mir-96-P1 Spt-Mir-96-P1 Spu-Mir-96-P1 Sro-Mir-96-P1 Sto-Mir-96-P1 Tgu-Mir-96-P1 War-Mir-96-P1 Xbo-Mir-96-P1 Xtr-Mir-96-P1

Node of Origin (locus)

G. salaris

Node of Origin (family)

Bilateria

Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)

scf7180006952513: 23990-24062 [+] UCSC Ensembl

Seed

UUGGCAC

Precursor
(pre-Mir +30nt flank)

UGAAAGAUUAAUAGAAUGGUUUUGGAUCCGCUUGGCACUCUAGGAAUCGUCUCUAACAGAAUAAUUAACCCAUUUAUUUGAGACGGACCGAGUGUGCUAAACAAGUCUUCCAUUCAAAGCCUCAUAAAUGUUG

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Structure

        10        20        30            40        50        60      
UGAAAGAUUAAUAGAAUGGUUU    UCC     ----|   U  A  AA       UAACAGAAUAAU 
                      UGGA   GCUUG    GCAC CU GG  UCGUCUC            U
                      ACCU   UGAAC    CGUG GA CC  GGCAGAG            A
GUUGUAAAUACUCCGAAACUU-    UC-     AAAU^   U  G  A-       UUUAUUUACCCA 
 130       120        110        100        90         80        70

Deep sequencing

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Gsa-Mir-96-P1y_5p

mirBase accession

MIMAT0035256

Sequence

0- CUUGGCACUCUAGGAAUCGUCUC -23

Get sequence

Star sequence

Gsa-Mir-96-P1y_3p*

mirBase accession

MIMAT0035257

Sequence

51- GACGGACCGAGUGUGCUAAACA -73

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