| MirGeneDB ID | Mdo-Mir-12404 |
|---|
| Family name |
MIR-12404 (all species) |
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| Species |
Gray short-tailed opossum (Monodelphis domestica) |
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| MiRBase ID |
mdo-mir-12404
|
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| Paralogues |
|
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| Orthologues |
Sha-Mir-12404
|
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| Node of Origin (locus) |
Marsupialia
|
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| Node of Origin (family) |
Marsupialia
|
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Genome context
(monDom5_add) |
X: 63562541-63562599 [+]
UCSC
Ensembl
|
|---|
| Seed |
GGUGAAG |
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Precursor
(pre-Mir +30nt flank) |
AUGCCAGAGGGCUCUAUCUGAGGCCUAAGGAGGUGAAGUGACUUGCCAAGGUUAUUCAUGUGCUAUCUUAAGCAAGUCCCUUCCCCUCUCUACCCCUCAGUAUUCUCUUCUGUAAAUUG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AUGCCAGAGGGCUCUAU-- CC AG U U C-| UAUUC
CUGAGG UA GAGG GAAG GACUUGC AAGGU A
GACUCC AU CUCC CUUC CUGAACG UUCUA U
GUUAAAUGUCUUCUCUUAU CC CU C C AA^ UCGUG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Mdo-Mir-12404_5p |
| mirBase accession | MIMAT0050449 |
|---|
| Sequence |
0- AGGUGAAGUGACUUGCCAAGGU -22
Get sequence
|
|---|
| Star sequence |
Mdo-Mir-12404_3p* (predicted) |
| mirBase accession | MIMAT0050450 |
|---|
| Sequence |
36- CUUAAGCAAGUCCCUUCCCCUCU -59
Get sequence
|
|---|
