MirGeneDB 3.0
MirGeneDB ID

Pab-Mir-1249

Family name MIR-1249 (all species)
Species Sumatran orangutan (Pongo abelii)
MiRBase ID
Paralogues
Orthologues Bta-Mir-1249  Cfa-Mir-1249  Cja-Mir-1249  Cpo-Mir-1249  Dno-Mir-1249  Eca-Mir-1249  Ete-Mir-1249  Hsa-Mir-1249  Laf-Mir-1249  Mml-Mir-1249  Mmr-Mir-1249  Mmu-Mir-1249  Ocu-Mir-1249  Rno-Mir-1249 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces)		 CM068844.1: 51727941-51727999 [-] UCSC Ensembl
Seed CGCCCUU
Precursor
(pre-Mir +30nt flank)		 
CCUGCUCCUCAGAUUAUUGUUGGCAUGGGGAGGAGGGAGGAGAUGGGCCAAGUUCCCUCUGGCUGGAACGCCCUUCCCCCCCUUCUUCACCUGGCGAACUCCUACUCGUCCUUCAAGAC
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Structure
        10          20         30        40        50        60
CCUGCUCCUCAGAUUAUU--   G  AU  -|        A  A  U    CAA    CCUC 
                    GUU GC  GG GGAGGAGGG GG GA GGGC   GUUC    U
                    CAA CG  CC CUUCUUCCC CC CU CCCG   CAAG    G
CAGAACUUCCUGCUCAUCCU   G  GU  A^        -  C  U    ---    GUCG 
       110       100        90        80         70
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Tissue expression
- +
Br Br Li Li
Star sequence

Pab-Mir-1249_5p*
mirBase accessionNone
Sequence 
0- AGGAGGGAGGAGAUGGGCCAAGUUC -25
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Mature sequence

Pab-Mir-1249_3p (predicted)
mirBase accessionNone
Sequence 
37- ACGCCCUUCCCCCCCUUCUUCA -59
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