| MirGeneDB ID | Pab-Mir-296 |
|---|
| Family name |
MIR-296 (all species) |
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| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-296
Cfa-Mir-296
Cja-Mir-296
Cpo-Mir-296
Dno-Mir-296
Eca-Mir-296
Hsa-Mir-296
Laf-Mir-296
Mml-Mir-296
Mmr-Mir-296
Mmu-Mir-296
Rno-Mir-296
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054700.2: 63222977-63223032 [-]
UCSC
Ensembl
|
|---|
| Seed |
GGGCCCC |
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Precursor
(pre-Mir +30nt flank) |
GUGGGAGGUGAGAAGAAAGGACCCUUCCGGAGGGCCCCCCCUCAAUCCUGUUGUGCCUAAUUCAGAGGGUUGGGUGGAGGCUCUCCUGAAGGGCUCUGAAGAGCACUGCACCCACA
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
GUGGGAGGUGAGAAGAA--| GA C C C GUUGUGC
AG CCCUUC GGAGGGCC CC CUCAAUCCU C
UC GGGAAG CCUCUCGG GG GGGUUGGGA U
ACACCCACGUCACGAGAAG^ UC U A U GACUUAA
110 100 90 80 70 60 |
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| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
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| Motifs | UGUG in loop |
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Tissue expression
|
|
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| Mature sequence |
Pab-Mir-296_5p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
0- AGGGCCCCCCCUCAAUCCUGU -21
Get sequence
|
|---|
| Star sequence |
Pab-Mir-296_3p* |
| mirBase accession | None |
|---|
| Sequence |
35- AGGGUUGGGUGGAGGCUCUCC -56
Get sequence
|
|---|
