| MirGeneDB ID | Pab-Mir-6529 |
|---|
| Family name |
MIR-6529 (all species) |
|---|
| Species |
Sumatran orangutan (Pongo abelii) |
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| MiRBase ID |
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-6529
Cfa-Mir-6529
Cja-Mir-6529
Cpo-Mir-6529
Dno-Mir-6529
Eca-Mir-6529
Ete-Mir-6529
Hsa-Mir-6529
Laf-Mir-6529
Mml-Mir-6529
Mmr-Mir-6529
Ocu-Mir-6529
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM068843.1: 18027681-18027741 [+]
UCSC
Ensembl
|
|---|
| Seed |
AGAGAUC |
|---|
Precursor
(pre-Mir +30nt flank) |
AACAUCUUAGAUGAGAAAACCUGUUCUCUUGAGAGAUCAGAGGCGCAGAGUGCGUCAGUGUCAAUGAAGCCUGUGCCUUUUACCUCUUUAAGAGCGUACGGUUUCAUUCUGCUCCUAAAUC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
AACAUCUUAGAUGAGAA- - UU -| AUC A GCGUCAGU
AACC UG CUCUU GAGAG AGAGGCGCAG GU \
UUGG AU GAGAA UUCUC UUUCCGUGUC CG G
CUAAAUCCUCGUCUUACU C GC U^ CAU - AAGUAACU
. 110 100 90 80 70 |
|---|
| Deep sequencing |
|
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| 3' NTU |
Unknown
|
|---|
| Motifs | CNNC at 3p(+17) |
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Tissue expression
|
|
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| Mature sequence |
Pab-Mir-6529_5p |
| mirBase accession | None |
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| Sequence |
0- GAGAGAUCAGAGGCGCAGAGU -21
Get sequence
|
|---|
| Star sequence |
Pab-Mir-6529_3p* (predicted) |
| mirBase accession | None |
|---|
| Sequence |
39- CCUGUGCCUUUUACCUCUUUAA -61
Get sequence
|
|---|
