| MirGeneDB ID | Pab-Mir-675 |
|---|
| Family name |
MIR-675 (all species) |
|---|
| Species |
Sumatran orangutan (Pongo abelii) |
|---|
| MiRBase ID |
|
|---|
| Paralogues |
|
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| Orthologues |
Cfa-Mir-675
Cja-Mir-675
Cpo-Mir-675
Dno-Mir-675
Eca-Mir-675
Hsa-Mir-675
Laf-Mir-675
Mml-Mir-675
Mmr-Mir-675
Mmu-Mir-675
Neu-Mir-675
Rno-Mir-675
Sha-Mir-675
|
|---|
| Node of Origin (locus) |
Theria
|
|---|
| Node of Origin (family) |
Theria
|
|---|
Genome context
(GCA_028885655.2_NHGRI_mPonAbe1-v2.0_traces) |
CM054688.2: 1985962-1986018 [-]
UCSC
Ensembl
|
|---|
| Seed |
UGUAUGC |
|---|
Precursor
(pre-Mir +30nt flank) |
CGGUCCCACGAGGCACUGCGGCCCAGGGUCUGGUGCGGAGAGGGCCCACAGUGGACUUGGUGACGCUGUAUGCCCUCACCGCUCAGCCCCUGGGGCUGGCUUGGCAGACAGUACAGC
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50
CGGUCCCACGAGGCACUG- -| U U A CC GACU
CGG CCCAGGG CUGG GCGG GAGGGC ACAGUG U
GUC GGGUCCC GACU CGCC CUCCCG UGUCGC G
CGACAUGACAGACGGUUCG G^ C - A UA AGUG
110 100 90 80 70 60 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
No
|
|---|
| Motifs | UG at 5p(-14) |
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Tissue expression
|
|
|---|
| Star sequence |
Pab-Mir-675_5p* |
| mirBase accession | None |
|---|
| Sequence |
0- UGGUGCGGAGAGGGCCCACAGUG -23
Get sequence
|
|---|
| Mature sequence |
Pab-Mir-675_3p (predicted) |
| mirBase accession | None |
|---|
| Sequence |
35- CUGUAUGCCCUCACCGCUCAGC -57
Get sequence
|
|---|
