| MirGeneDB ID | Pma-Mir-140-o1 |
|---|
| Family name |
MIR-140 (all species) |
|---|
| Species |
Sea Lamprey (Petromyzon marinus) |
|---|
| MiRBase ID |
pma-mir-140
|
|---|
| Paralogues |
Pma-Mir-140-o2
Pma-Mir-140-o3
|
|---|
| Orthologues |
Laf-Mir-140-P1-v1
|
|---|
| Node of Origin (locus) |
P. marinus
|
|---|
| Node of Origin (family) |
Vertebrata
|
|---|
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NC_046131.1: 1629117-1629178 [-]
UCSC
Ensembl
|
|---|
| Seed |
AGUGGUU |
|---|
Precursor
(pre-Mir +30nt flank) |
UACAACGACAACCCCCCCGUCUCGACCGCUCAGUGGUUUUACCCUAUGGUAGCUUUGAAUGGCAGACUCUACCACAGGGUAGAACCACGGACCGGUGACGGGGGGGGUGGUGGGACGCUGCG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
UACAACGACAACCCCCC-----| UCG C A A CUUUGAA
CGUC ACCG UC GUGGUUUUACCCU UGGUAG U
GCAG UGGC AG CACCAAGAUGGGA ACCAUC G
GCGUCGCAGGGUGGUGGGGGGG^ --- C G C UCAGACG
120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| Comment | There are three snps between the assembled genome and the miRBase entry. |
|---|
| 3' NTU |
No
|
|---|
| Motifs | No |
|---|
Tissue expression
|
| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
| |
|
|
|
|
|
|
|
|
|
|
|---|
| Mature sequence |
Pma-Mir-140-o1_5p |
| mirBase accession | MIMAT0019471 |
|---|
| Sequence |
0- CAGUGGUUUUACCCUAUGGUAG -22
Get sequence
|
|---|
| Star sequence |
Pma-Mir-140-o1_3p* |
| mirBase accession | None |
|---|
| Sequence |
40- ACCACAGGGUAGAACCACGGAC -62
Get sequence
|
|---|
