| MirGeneDB ID | Pma-Mir-30-P1o2 |
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| Family name |
MIR-30 (all species) |
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| Species |
Sea Lamprey (Petromyzon marinus) |
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| MiRBase ID |
pma-mir-30d
|
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| Paralogues |
Pma-Mir-30-P1o3a
Pma-Mir-30-P1o3b
Pma-Mir-30-P1o4
Pma-Mir-30-P1o5
Pma-Mir-30-P2o3
Pma-Mir-30-P2o4
Pma-Mir-30-P2o5
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| Orthologues |
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| Node of Origin (locus) |
P. marinus
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| Node of Origin (family) |
Vertebrata
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Genome context
(GCF_010993605.1_kPetMar1.pri_genomic) |
NW_022638108.1: 592658-592723 [-]
UCSC
Ensembl
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| Seed |
GUAAACA |
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Precursor
(pre-Mir +30nt flank) |
CCGUCCCGGACCCGCUUGGCGUCCGGGAGCUGUAAACAUCCACGACUGGAAGCUGCCCCACUGUGGCCACGCGGCUUUCAGUCCGGUGUUUACGGCUCCCGCCAGCCCCUCCCUACAUGCAGCGGG
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
CCGUCCCGGACCCGCUU--| GUC CAC GCCCCACU
GGC CGGGAGCUGUAAACAUC GACUGGAAGCU G
CCG GCCCUCGGCAUUUGUGG CUGACUUUCGG U
GGGCGACGUACAUCCCUCC^ ACC C-- CGCACCGG
120 110 100 90 80 70 |
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| Deep sequencing |
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| Comment | There are two snps between the assembled genome and the miRBase entry. |
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| 3' NTU |
Unknown
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| Motifs | UG at 5p(-14), CNNC at 3p(+17) |
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Tissue expression
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| Br |
Gi |
Gu |
He |
Ki |
La |
Li |
Mo |
Mu |
Sk |
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| Mature sequence |
Pma-Mir-30-P1o2_5p |
| mirBase accession | MIMAT0019427 |
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| Sequence |
0- UGUAAACAUCCACGACUGGAAGCU -24
Get sequence
|
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| Star sequence |
Pma-Mir-30-P1o2_3p* (predicted) |
| mirBase accession | None |
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| Sequence |
44- CUUUCAGUCCGGUGUUUACGGC -66
Get sequence
|
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