Mir-33-P3

MirGeneDB ID

Rno-Mir-33-P3

Family name

MIR-33 (all species)

Species

Norway rat (Rattus norvegicus)

MiRBase ID

rno-mir-33

Paralogues

Orthologues

Aae-Mir-33 Aca-Mir-33-P3 Aga-Mir-33 Ami-Mir-33-P3 Ava-Mir-33 Bge-Mir-33 Bta-Mir-33-P3 Cfa-Mir-33-P3 Cin-Mir-33 Cja-Mir-33-P3 Cli-Mir-33-P3 Cmi-Mir-33-P3 Cpi-Mir-33-P3 Cpo-Mir-33-P3 Csc-Mir-33 Cte-Mir-33 Dan-Mir-33 Dgr-Mir-33 Dlo-Mir-33 Dma-Mir-33 Dme-Mir-33 Dmo-Mir-33 Dno-Mir-33-P3 Dpu-Mir-33 Dsi-Mir-33 Dya-Mir-33 Eba-Mir-33 Ebu-Mir-33 Eca-Mir-33-P3 Efe-Mir-33 Egr-Mir-33 Esc-Mir-33 Ete-Mir-33-P3 Gga-Mir-33-P3 Gja-Mir-33-P3 Gpa-Mir-33 Gsp-Mir-33 Hru-Mir-33 Hsa-Mir-33-P3 Isc-Mir-33 Laf-Mir-33-P3 Lch-Mir-33-P3 Lgi-Mir-33 Llo-Mir-33 Loc-Mir-33-P3 Mal-Mir-33-P3 Mdo-Mir-33-P3 Mgi-Mir-33 Mml-Mir-33-P3 Mmr-Mir-33-P3 Mmu-Mir-33-P3 Mom-Mir-33 Mun-Mir-33-P3 Neu-Mir-33-P3 Npo-Mir-33 Oan-Mir-33-P3 Obi-Mir-33 Ocu-Mir-33-P3 Ofu-Mir-33 Ovu-Mir-33 Pab-Mir-33-P3 Pau-Mir-33 Pbv-Mir-33-P3 Pca-Mir-33 Pcr-Mir-33 Pdu-Mir-33 Pfl-Mir-33 Pma-Mir-33-o3 Pmi-Mir-33 Sha-Mir-33-P3 Sko-Mir-33 Snu-Mir-33 Spt-Mir-33-P3 Spu-Mir-33 Sto-Mir-33-P3 Tca-Mir-33 Tgu-Mir-33-P3 Tni-Mir-33-P3 War-Mir-33 Xbo-Mir-33 Xla-Mir-33-P3a Xla-Mir-33-P3b Xtr-Mir-33-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(rn6)

chr7: 123431617-123431677 [+] UCSC Ensembl

Seed

UGCAUUG

Precursor
(pre-Mir +30nt flank)

GGGCCUCGUGCCUCCUGGCGGGCUGCCGUGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGCAGUACCUGUGCAAUGUUUCCACAGUGCAUCACGGAGGCCUGCCCUGGCUGCCCGCUGUGCU

Get precursor sequence

Structure

        10          20        30        40        50          
GGGCCUCGUGCCUCCUG--|      G              AGUU        UGUUCUGG 
                   GCGGGCU CCGUGGUGCAUUGU    GCAUUGCA        \
                   CGUCCGG GGCACUACGUGACA    UGUAACGU        C
UCGUGUCGCCCGUCGGUCC^      A              CCUU        GUCCAUGA 
 .       110       100        90        80        70

Deep sequencing

3' NTU

Yes

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Dr	Dr	Ad	Bi	Bi	Bi	Bi	Br	Br	Br	Br	Ce	Ce	Ce	Ce	Co	Co	Co	Co	Du	Du	Du	Du	Fa	He	He	He	Hi	Hi	Il	Il	Je	Je	Ki	Ki	Ki	Ki	Ki	La	Li	Li	Li	Li	Li	Li	Lu	Me	Me	Mu	Ov	Pa	Pa	Pa	Sk	Sm	So	So	So	So	Sp	St	St	St	St	Te	Te	Th	Ut	Wh

Mature sequence

Rno-Mir-33-P3_5p

mirBase accession

MIMAT0000812

Sequence

0- GUGCAUUGUAGUUGCAUUGCA -21

Get sequence

Proposed targets

microrna.org: MIMAT0000812
TargetScanVert: rno-miR-33-5p
miRDB: MIMAT0000812

Star sequence

Rno-Mir-33-P3_3p*

mirBase accession

MIMAT0017104

Sequence

40- CAAUGUUUCCACAGUGCAUCA -61

Get sequence

Proposed targets

TargetScanVert: rno-miR-33-3p
miRDB: MIMAT0017104