Mir-219-P3

MirGeneDB ID

Ami-Mir-219-P3

Family name

MIR-219 (all species)

Species

American alligator (Alligator mississippiensis)

MiRBase ID

ami-mir-219a

Paralogues

Ami-Mir-219-P2

Orthologues

Aae-Mir-219 Aca-Mir-219-P3 Aga-Mir-219 Agr-Mir-219 Bfl-Mir-219 Bge-Mir-219 Bko-Mir-219 Bla-Mir-219 Bpl-Mir-219 Bta-Mir-219-P3 Cfa-Mir-219-P3 Cin-Mir-219 Cja-Mir-219-P3 Cmi-Mir-219-P3 Cpi-Mir-219-P3 Cpo-Mir-219-P3 Csc-Mir-219 Cte-Mir-219 Dan-Mir-219 Dgr-Mir-219 Dlo-Mir-219 Dma-Mir-219 Dme-Mir-219 Dmo-Mir-219 Dno-Mir-219-P3 Dpu-Mir-219 Dre-Mir-219-P3a Dsi-Mir-219 Dya-Mir-219 Eba-Mir-219 Eca-Mir-219-P3 Egr-Mir-219 Esc-Mir-219 Ete-Mir-219-P3 Gja-Mir-219-P3 Gmo-Mir-219-P3a Gmo-Mir-219-P3b Gpa-Mir-219 Gsa-Mir-219 Gsp-Mir-219 Hmi-Mir-219 Hru-Mir-219 Hsa-Mir-219-P3 Isc-Mir-219 Laf-Mir-219-P3 Lan-Mir-219 Lch-Mir-219-P3 Llo-Mir-219 Mal-Mir-219-P3a Mal-Mir-219-P3b Mdo-Mir-219-P3 Mgi-Mir-219 Mml-Mir-219-P3 Mmr-Mir-219-P3 Mmu-Mir-219-P3 Mmu-Mir-219-P3-as Mom-Mir-219 Mun-Mir-219-P3-v1 Neu-Mir-219-P3 Obi-Mir-219 Ocu-Mir-219-P3 Ofu-Mir-219 Ovu-Mir-219 Pab-Mir-219-P3 Pau-Mir-219 Pbv-Mir-219-P3 Pca-Mir-219 Pcr-Mir-219 Pfl-Mir-219 Pmi-Mir-219 Pve-Mir-219 Rno-Mir-219-P3 Rph-Mir-219 Sha-Mir-219-P3 Sko-Mir-219 Sma-Mir-219 Sne-Mir-219 Snu-Mir-219 Spt-Mir-219-P3 Spu-Mir-219 Sro-Mir-219 Sto-Mir-219-P3-v1 Tca-Mir-219 Tni-Mir-219-P3a Tni-Mir-219-P3b Tur-Mir-219 War-Mir-219 Xbo-Mir-219

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)

NW_017711269.1: 103736-103791 [-] UCSC

Seed

GAUUGUC

Precursor
(pre-Mir +30nt flank)

CACGCCUCCUCAUAUGUGAGCGCCGGGUCCUGAUUGUCCAAACGCAAUUCUUGUGUCUGCCCCAAGAAUUGAGUGUGGACGUCGGGAGCCGCCGUUCCCCACCGACGCCCGGCGGA

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Structure

        10          20        30        40        50        
CACGCCUCCUCAUAUGU--|    C   G       U     A  G         UGUC 
                   GAGCG CGG UCCUGAU GUCCA AC CAAUUCUUG    \
                   CUUGC GCC AGGGCUG CAGGU UG GUUAAGAAC    U
AGGCGGCCCGCAGCCACCC^    C   G       -     G  A         CCCG 
    110       100        90         80        70        60

Deep sequencing

Comment

The MIR-219 family shows substantial variation of arm-usage and is currently, across all species, considered a co-mature.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17), UGUG in loop

Tissue expression

To

Mature sequence

Ami-Mir-219-P3_5p

mirBase accession

MIMAT0038248

Sequence

0- UGAUUGUCCAAACGCAAUUCUUG -23

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Co-mature sequence

Ami-Mir-219-P3_3p

mirBase accession

MIMAT0038249

Sequence

34- AGAAUUGAGUGUGGACGUCGGG -56

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