MirGeneDB 3.0
MirGeneDB ID

Cja-Mir-149

Family name MIR-149 (all species)
Species White-tufted-ear marmoset (Callithrix jacchus)
MiRBase ID
Paralogues
Orthologues Bta-Mir-149  Cfa-Mir-149  Cpo-Mir-149  Dno-Mir-149  Eca-Mir-149  Ete-Mir-149  Hsa-Mir-149  Laf-Mir-149  Mml-Mir-149  Mmr-Mir-149  Mmu-Mir-149  Ocu-Mir-149  Pab-Mir-149  Rno-Mir-149 
Node of Origin (locus) Eutheria
Node of Origin (family) Eutheria
Genome context
(GCA_011100555.2_mCalJa1.2.pat.X_genomic)		 CM021920.1: 158214811-158214872 [+] UCSC Ensembl
Seed CUGGCUC
Precursor
(pre-Mir +30nt flank)		 
UGCCCGGGGCUCCCAGGCCGGCGCCCAAGCUCUGGCUCCGUGUCUUCACUCCCGUGUUUGUCCGAGGAGGGAGGGAGGGACGGGGGCUGUGCUGGGGCAGCCGGAACAGCGCAGGUCACCGG
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Structure
        10         20         30         40        50        60 
UGCCCGGGGCUCCCAGG-     -|   A   UCU      -  G     A     GUGUUUG 
                  CCGGC GCCC AGC   GGCUCC GU UCUUC CUCCC       \
                  GGCCG CGGG UCG   UCGGGG CA GGAGG GAGGG       U
GGCCACUGGACGCGACAA     A^   G   UG-      G  G     -     AGGAGCC 
120       110       100        90         80         70
Deep sequencing
3' NTU Unknown
MotifsUGUG in loop
Tissue expression
- +
To
Mature sequence

Cja-Mir-149_5p
mirBase accessionNone
Sequence 
0- UCUGGCUCCGUGUCUUCACUCCC -23
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Star sequence

Cja-Mir-149_3p* (predicted)
mirBase accessionNone
Sequence 
40- GAGGGAGGGACGGGGGCUGUGC -62
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