| MirGeneDB ID | Cpo-Mir-149 |
|---|
| Family name |
MIR-149 (all species) |
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| Species |
Guinea pig (Cavia porcellus) |
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| MiRBase ID |
cpo-mir-149
|
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| Paralogues |
|
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| Orthologues |
Bta-Mir-149
Cfa-Mir-149
Cja-Mir-149
Dno-Mir-149
Eca-Mir-149
Ete-Mir-149
Hsa-Mir-149
Laf-Mir-149
Mml-Mir-149
Mmr-Mir-149
Mmu-Mir-149
Ocu-Mir-149
Pab-Mir-149
Rno-Mir-149
|
|---|
| Node of Origin (locus) |
Eutheria
|
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| Node of Origin (family) |
Eutheria
|
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Genome context
(cavPor3) |
scaffold_13: 23532947-23533008 [-]
UCSC
|
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| Seed |
CUGGCUC |
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Precursor
(pre-Mir +30nt flank) |
CCUGCCCGGUCCUCGGGCCGGUGCCCGGGCUCUGGCUCCGUGUCUUCACUCCCGUGUCUGUCCGAGGAGGGAGGGAGGGACGGGGGCUGUGCUGGGGCAGCCGGAAAGGCACAGGUCACCGG
Get precursor sequence
|
|---|
| Structure | 10 20 30 40 50 60
CCUGCCCGGUCCUCGGG- -| G UCU - G A GUGUCUG
CCGG UGCCC GGC GGCUCC GU UCUUC CUCCC \
GGCC ACGGG UCG UCGGGG CA GGAGG GAGGG U
GGCCACUGGACACGGAAA G^ G UG- G G - AGGAGCC
120 110 100 90 80 70 |
|---|
| Deep sequencing |
|
|---|
| 3' NTU |
Unknown
|
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| Motifs | UGUG in loop |
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Tissue expression
|
| Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
| |
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| Mature sequence |
Cpo-Mir-149_5p |
| mirBase accession | MIMAT0047026 |
|---|
| Sequence |
0- UCUGGCUCCGUGUCUUCACUCCC -23
Get sequence
|
|---|
| Star sequence |
Cpo-Mir-149_3p* (predicted) |
| mirBase accession | MIMAT0047027 |
|---|
| Sequence |
40- GAGGGAGGGACGGGGGCUGUGC -62
Get sequence
|
|---|
