MirGeneDB 3.0
MirGeneDB ID

Cmi-Mir-148-P4

Family name MIR-148 (all species)
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-148-P1  Cmi-Mir-148-P2  Cmi-Mir-148-P3 
Orthologues Aca-Mir-148-P4  Ami-Mir-148-P4  Bta-Mir-148-P4  Cfa-Mir-148-P4  Cja-Mir-148-P4  Cli-Mir-148-P4  Cpi-Mir-148-P4  Cpo-Mir-148-P4  Dno-Mir-148-P4  Ebu-Mir-148  Eca-Mir-148-P4  Ete-Mir-148-P4  Gga-Mir-148-P4  Gja-Mir-148-P4  Hsa-Mir-148-P4  Laf-Mir-148-P4  Lch-Mir-148-P4  Loc-Mir-148-P4  Mml-Mir-148-P4  Mmr-Mir-148-P4  Mmu-Mir-148-P4  Mun-Mir-148-P4  Neu-Mir-148-P4  Ocu-Mir-148-P4  Pab-Mir-148-P4  Pbv-Mir-148-P4  Rno-Mir-148-P4  Sha-Mir-148-P4  Spt-Mir-148-P4  Tgu-Mir-148-P4  Xla-Mir-148-P4a  Xla-Mir-148-P4b  Xtr-Mir-148-P4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI638125.1: 5404-5461 [-] UCSC Ensembl
Seed CAGUGCA
Precursor
(pre-Mir +30nt flank)		 
AAGGCUGAAGAGAGACUGGCUCCCAAGCUGAAGUUCUGUCAUACACUCAGGCUGUAGCUAAUGGAAGUCAGUGCAUCACAGAACUUUGACUCGAGAUUGCCAUCGCCACGUGACGUUG
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Structure
        10            20        30        40        50         
AAGGCUGAAGAGAGACUGG----|  CCA  CU          C  A    CA    GUAGC 
                       CUC   AG  GAAGUUCUGU AU CACU  GGCU     U
                       GAG   UC  UUUCAAGACA UA GUGA  CUGA     A
GUUGCAGUGCACCGCUACCGUUA^  C--  AG          C  C    --    AGGUA 
      110       100          90        80        70          60
Deep sequencing
CommentGiven the position of the Drosha cut on the 5p arm it appears that the 3p arm is mono-adenylated.
3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
- +
Bl Br Ey Gi He In Ki Li Mu Ov Pa Re Sk Sp Te Ut
Star sequence

Cmi-Mir-148-P4_5p*
mirBase accessionNone
Sequence 
0- AAGUUCUGUCAUACACUCAGGCU -23
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Mature sequence

Cmi-Mir-148-P4_3p
mirBase accessionNone
Sequence 
37- UCAGUGCAUCACAGAACUUUG -58
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