Mir-10-P4

MirGeneDB ID

Gsa-Mir-10-P4

Family name

MIR-10 (all species)

Species

Russian doll killer (Gyrodactylus salaris)

MiRBase ID

gsa-mir-993

Paralogues

Gsa-Mir-10-P1o6 Gsa-Mir-10-P1o7 Gsa-Mir-10-P3

Orthologues

Aae-Mir-10-P4 Adi-Mir-10 Aga-Mir-10-P4 Asp-Mir-10 Asu-Mir-10-P4 Ava-Mir-10-P4 Bge-Mir-10-P4 Bko-Mir-10-P4o1 Bko-Mir-10-P4o2 Bpl-Mir-10-P4 Csc-Mir-10-P4q Csc-Mir-10-P4r Cte-Mir-10-P4 Dan-Mir-10-P4 Dgr-Mir-10-P4 Dlo-Mir-10-P4-v1 Dma-Mir-10-P4 Dme-Mir-10-P4 Dmo-Mir-10-P4 Dpu-Mir-10-P4 Dsi-Mir-10-P4 Dya-Mir-10-P4 Efe-Mir-10-P4a Efe-Mir-10-P4b Efe-Mir-10-P4c Gpa-Mir-10-P4 Hme-Mir-10-P4 Isc-Mir-10-P4 Lan-Mir-10-P4d Lan-Mir-10-P4e Llo-Mir-10-P4-v1 Lpo-Mir-10-P4j Lpo-Mir-10-P4k Lpo-Mir-10-P4l Lpo-Mir-10-P4m Lpo-Mir-10-P4n Nve-Mir-10 Ofu-Mir-10-P4 Pca-Mir-10-P4 Pcr-Mir-10-P4s1 Pcr-Mir-10-P4s2 Pcr-Mir-10-P4t Pdu-Mir-10-P4 Pdu-Mir-10-P4-as Snu-Mir-10-P4 Tca-Mir-10-P4 Tur-Mir-10-P4u Tur-Mir-10-P4v Tur-Mir-10-P4w

Node of Origin (locus)

Protostomia

Node of Origin (family)

Eumetazoa

Genome context
(gyrodactylus_salaris.PRJNA244375.WBPS19.genomic)

scf7180006950686: 1088-1147 [-] UCSC Ensembl

Seed

UCUGUAU

Precursor
(pre-Mir +30nt flank)

AAUUAAGUGAGUCUUUGUUCUUAUCGAAUGAUCUGUAUUCUUGAGCUUGUGGUUGUUUAAUUUAAACUAGAAGCUCGAGCAUACAGGUUCUUCGAAAGUACCCAGCACCAUCUAGUUAAU

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Structure

        10           20        30        40        50         
AAUUAAGUGAGUCUUUGUU---|  A     U         U         G   UUGUUU 
                      CUU UCGAA GAUCUGUAU CUUGAGCUU UGG      A
                      GAA AGCUU UUGGACAUA GAGCUCGAA AUC      A
UAAUUGAUCUACCACGACCCAU^  -     C         C         G   AAAUUU 
.       110       100         90        80        70        60

Deep sequencing

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

To

Mature sequence

Gsa-Mir-10-P4_5p

mirBase accession

MIMAT0035304

Sequence

0- AUCUGUAUUCUUGAGCUUGUGG -22

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Co-mature sequence

Gsa-Mir-10-P4_3p

mirBase accession

MIMAT0035305

Sequence

38- AGAAGCUCGAGCAUACAGGUUC -60

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