MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-92-o2

Family name MIR-92 (all species)
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-92a-1
Paralogues Bfl-Mir-92-o1  Bfl-Mir-92-o3  Bfl-Mir-92-o4  Bfl-Mir-92-o5  Bfl-Mir-92-o6  Bfl-Mir-92-o7  Bfl-Mir-92-o8 
Orthologues Aca-Mir-92-P2a  Aca-Mir-92-P2c  Ami-Mir-92-P2a  Ami-Mir-92-P2c  Asu-Mir-92  Bla-Mir-92-o2  Bta-Mir-92-P2a  Bta-Mir-92-P2c  Bta-Mir-92-P2d  Cel-Mir-92  Cfa-Mir-92-P2a  Cfa-Mir-92-P2c  Cfa-Mir-92-P2d  Cja-Mir-92-P2a  Cja-Mir-92-P2c  Cja-Mir-92-P2d  Cli-Mir-92-P2a  Cli-Mir-92-P2c  Cmi-Mir-92-P2a  Cmi-Mir-92-P2b  Cmi-Mir-92-P2c  Cmi-Mir-92-P2d  Cpi-Mir-92-P2a  Cpi-Mir-92-P2c  Cpo-Mir-92-P2a  Cpo-Mir-92-P2c  Cpo-Mir-92-P2d  Dno-Mir-92-P2a  Dno-Mir-92-P2c  Dno-Mir-92-P2d  Dre-Mir-92-P2c  Dre-Mir-92-P2d  Ebu-Mir-92-P2e  Ebu-Mir-92-P2f  Eca-Mir-92-P2a  Eca-Mir-92-P2c  Eca-Mir-92-P2d  Esc-Mir-92  Ete-Mir-92-P2a  Ete-Mir-92-P2c  Ete-Mir-92-P2d  Gga-Mir-92-P2a  Gga-Mir-92-P2c  Gja-Mir-92-P2a  Gja-Mir-92-P2c  Gmo-Mir-92-P2c  Gmo-Mir-92-P2d  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P2a  Hsa-Mir-92-P2c  Hsa-Mir-92-P2d  Isc-Mir-92  Laf-Mir-92-P2a  Laf-Mir-92-P2c  Laf-Mir-92-P2d  Lch-Mir-92-P2c  Lch-Mir-92-P2d  Loc-Mir-92-P2c  Loc-Mir-92-P2d  Mal-Mir-92-P2d  Mdo-Mir-92-P2a  Mdo-Mir-92-P2c  Mdo-Mir-92-P2d  Mml-Mir-92-P2a  Mml-Mir-92-P2c  Mml-Mir-92-P2d  Mmr-Mir-92-P2a  Mmr-Mir-92-P2c  Mmr-Mir-92-P2d  Mmu-Mir-92-P2a  Mmu-Mir-92-P2c  Mmu-Mir-92-P2d  Mun-Mir-92-P2a  Mun-Mir-92-P2c  Neu-Mir-92-P2a  Neu-Mir-92-P2c  Oan-Mir-92-P2a  Oan-Mir-92-P2c  Oan-Mir-92-P2d  Obi-Mir-92  Ocu-Mir-92-P2a  Ocu-Mir-92-P2c  Ocu-Mir-92-P2d  Pab-Mir-92-P2a  Pab-Mir-92-P2c  Pab-Mir-92-P2d  Pbv-Mir-92-P2c  Pma-Mir-92-P2g  Rno-Mir-92-P2a  Rno-Mir-92-P2c  Rno-Mir-92-P2d  Sha-Mir-92-P2a  Sha-Mir-92-P2c  Sha-Mir-92-P2d  Sme-Mir-92  Spt-Mir-92-P2a  Spt-Mir-92-P2c  Sto-Mir-92-P2a  Sto-Mir-92-P2b  Sto-Mir-92-P2c  Tgu-Mir-92-P2a  Tgu-Mir-92-P2c  Tni-Mir-92-P2d  Xla-Mir-92-P2a  Xla-Mir-92-P2c3  Xla-Mir-92-P2c4  Xla-Mir-92-P2d3  Xla-Mir-92-P2d4  Xtr-Mir-92-P2a  Xtr-Mir-92-P2c  Xtr-Mir-92-P2d 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049981.1: 15365141-15365198 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-92-o2)		 Mir-92-o1 NC_049981.1: 15364646-15364704 [+] UCSC
Mir-92-o2 NC_049981.1: 15365141-15365198 [+] UCSC
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
UACUUCCCAAAGAACAUUGCCCUGACAAGAAGGUCGUGAUAGGUGGCAAUGUUGUACCCACACAAAUAUUGCACUUGUCCCGGCCUUUUUGCUUUGGCUUAAAGCAACAGUGAUAUAG
Get precursor sequence
Structure
        10          20        30        40        50         
UACUUCCCAAAGAACAUU--|  CUGA           U        G       GUACC 
                    GCC    CAAGAAGGUCG GAUAGGUG CAAUGUU     \
                    CGG    GUUUUUCCGGC CUGUUCAC GUUAUAA     C
GAUAUAGUGACAACGAAAUU^  UUUC           C        -       ACACA 
      110       100        90        80         70        60
Deep sequencing
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Bfl-Mir-92-o2_5p*
mirBase accessionNone
Sequence 
0- AGGUCGUGAUAGGUGGCAAUGUU -23
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Mature sequence

Bfl-Mir-92-o2_3p
mirBase accessionMIMAT0009478
Sequence 
36- UAUUGCACUUGUCCCGGCCUUU -58
Get sequence