MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-92-o1

Family name MIR-92 (all species)
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID
Paralogues Bfl-Mir-92-o2  Bfl-Mir-92-o3  Bfl-Mir-92-o4  Bfl-Mir-92-o5  Bfl-Mir-92-o6  Bfl-Mir-92-o7  Bfl-Mir-92-o8 
Orthologues Aca-Mir-92-P1a  Aca-Mir-92-P1c  Ami-Mir-92-P1a  Ami-Mir-92-P1c  Ami-Mir-92-P1d  Asu-Mir-92  Bla-Mir-92-o1  Bta-Mir-92-P1a  Bta-Mir-92-P1c  Bta-Mir-92-P1d  Cel-Mir-92  Cfa-Mir-92-P1a  Cfa-Mir-92-P1c  Cfa-Mir-92-P1d  Cja-Mir-92-P1a  Cja-Mir-92-P1c  Cja-Mir-92-P1d  Cli-Mir-92-P1a  Cli-Mir-92-P1c  Cmi-Mir-92-P1a  Cmi-Mir-92-P1b  Cmi-Mir-92-P1c  Cmi-Mir-92-P1d  Cpi-Mir-92-P1a  Cpi-Mir-92-P1c  Cpi-Mir-92-P1d  Cpo-Mir-92-P1a  Cpo-Mir-92-P1c  Cpo-Mir-92-P1d  Dno-Mir-92-P1a  Dno-Mir-92-P1c  Dno-Mir-92-P1d  Dre-Mir-92-P1a1  Dre-Mir-92-P1a2  Dre-Mir-92-P1d  Ebu-Mir-92-P1e  Eca-Mir-92-P1a  Eca-Mir-92-P1c  Eca-Mir-92-P1d  Esc-Mir-92  Ete-Mir-92-P1a  Ete-Mir-92-P1c  Ete-Mir-92-P1d  Gga-Mir-92-P1a  Gga-Mir-92-P1c  Gja-Mir-92-P1a  Gja-Mir-92-P1c  Gja-Mir-92-P1d  Gmo-Mir-92-P1a1  Gmo-Mir-92-P1a2  Gsp-Mir-92  Hmi-Mir-92  Hsa-Mir-92-P1a  Hsa-Mir-92-P1c  Hsa-Mir-92-P1d  Isc-Mir-92  Laf-Mir-92-P1a  Laf-Mir-92-P1c  Laf-Mir-92-P1d  Lch-Mir-92-P1a  Lch-Mir-92-P1d  Loc-Mir-92-P1a  Loc-Mir-92-P1d  Mal-Mir-92-P1a1  Mal-Mir-92-P1a2  Mal-Mir-92-P1d  Mdo-Mir-92-P1a  Mdo-Mir-92-P1c  Mdo-Mir-92-P1d  Mml-Mir-92-P1a  Mml-Mir-92-P1c  Mml-Mir-92-P1d  Mmr-Mir-92-P1a  Mmr-Mir-92-P1c  Mmr-Mir-92-P1d  Mmu-Mir-92-P1a  Mmu-Mir-92-P1c  Mmu-Mir-92-P1d  Mun-Mir-92-P1a  Mun-Mir-92-P1c  Mun-Mir-92-P1d  Neu-Mir-92-P1c  Oan-Mir-92-P1a5  Oan-Mir-92-P1a6  Oan-Mir-92-P1a7  Oan-Mir-92-P1a8  Oan-Mir-92-P1c  Oan-Mir-92-P1d  Obi-Mir-92  Ocu-Mir-92-P1a  Ocu-Mir-92-P1c  Ocu-Mir-92-P1d  Pab-Mir-92-P1a  Pab-Mir-92-P1c  Pab-Mir-92-P1d  Pbv-Mir-92-P1a  Pbv-Mir-92-P1c  Pbv-Mir-92-P1d  Pma-Mir-92-P1g  Pma-Mir-92-P1h  Pma-Mir-92-P1o1  Rno-Mir-92-P1a  Rno-Mir-92-P1c  Rno-Mir-92-P1d  Sha-Mir-92-P1a  Sha-Mir-92-P1c  Sha-Mir-92-P1d  Sme-Mir-92  Spt-Mir-92-P1a  Spt-Mir-92-P1c  Spt-Mir-92-P1d  Sto-Mir-92-P1a  Sto-Mir-92-P1b  Sto-Mir-92-P1c  Sto-Mir-92-P1d  Tgu-Mir-92-P1a  Tgu-Mir-92-P1c  Tgu-Mir-92-P1d  Tni-Mir-92-P1a1  Tni-Mir-92-P1a2  Xla-Mir-92-P1a3  Xla-Mir-92-P1a4  Xla-Mir-92-P1c3  Xla-Mir-92-P1c4  Xla-Mir-92-P1d1  Xla-Mir-92-P1d2  Xtr-Mir-92-P1a  Xtr-Mir-92-P1c  Xtr-Mir-92-P1d 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049981.1: 15364646-15364704 [+] UCSC
Clustered miRNAs
(< 50kb from Mir-92-o1)		 Mir-92-o1 NC_049981.1: 15364646-15364704 [+] UCSC
Mir-92-o2 NC_049981.1: 15365141-15365198 [+] UCSC
Seed AUUGCAC
Precursor
(pre-Mir +30nt flank)		 
UGAAGCAACACAUAUUGUGCCCUGUCAGACAGGUCAGGAUUGGUGGCAAUGCUUAUAAACAUGCCAGUAUUGCACUUGUCCCGGCCUUUCUGAUUGGUUAAAAGUCUGCUGUCUAUCCU
Get precursor sequence
Structure
        10           20        30        40        50         
UGAAGCAACACAUAUUGU---|  CU      C     A    U    G       UAUAA 
                     GCC  GUCAGA AGGUC GGAU GGUG CAAUGCU     A
                     UGG  UAGUCU UCCGG CCUG UCAC GUUAUGA     C
UCCUAUCUGUCGUCUGAAAAU^  U-      U     C    U    -       CCGUA 
       110       100         90        80         70        60
Deep sequencing
CommentIt is not clear either from phylogenetic or syntenic information how many Mir-92 genes were present in the last common ancestor of bilaterians and how the vertebrate Mir-92s relate to the invertebrate Mir-92s and thus these multiple paralogues in invertebrates are classified here as orphans pending new data.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
- +
To
Star sequence

Bfl-Mir-92-o1_5p*
mirBase accessionNone
Sequence 
0- AGGUCAGGAUUGGUGGCAAUGCU -23
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Mature sequence

Bfl-Mir-92-o1_3p
mirBase accessionNone
Sequence 
37- UAUUGCACUUGUCCCGGCCUUU -59
Get sequence